Skip to main content

📣 Announcements

  • v1.0.7 released — improved install reliability for modern Python environments (pip ≥ 24.1)
  • StatescopePro on development branch — Faster Deconvolution scaled for large cohorts with advanced features. Find it on branch StatescopePro on tgac-vumc/Statescope on GitHub.
  • v1.0.6 released — improved CPU ↔ GPU interoperability for saved models and execution

Statescope

Statescope is a probabilistic framework for robust cell-type and cell-state inference from bulk RNA-seq data.

Bayesian Modeling

Unified Bayesian framework for cell-type fractions, in silico purification, and downstream state discovery.

Python and R packages

Easy install, reproducible workflows, and simple APIs for both Python and R users.

GPU Accelerated

Optimized for large cohorts with seamless CPU ↔ GPU interoperability.

Statescope Overview